ChangYu Spray
Phone: 86-769-85354676
M Phone: 13925815606
C Service: 86-769-85338576

Position: Home > News > Industry News
Industry News

Nozzle R Package

Nozzle is an R package for generation of reports in high-throughput data analysis pipelines. Nozzle reports are implemented in HTML, JavaScript, and Cascading Style Sheets (CSS), but developers do not need any knowledge of these technologies to work with Nozzle. Instead they can use a simple R API to design and implement powerful reports with advanced features such as foldable sections, zoomable figures, sortable tables, and supplementary information. Please cite our Bioinformatics paper if you are using Nozzle in your work.

Firehose Reports At-a-Glance (a visual overview of Nozzle report features)
API Overview (current release)
TCGA GDAC Research Call (11 August 2011)
TCGA Face-2-Face Meeting (27 April 2011)
Report Examples
Preprint of the Nozzle Bioinformatics Applications Note as a Nozzle Report (demonstrates custom styles).
Advanced demo rendered to HTML (use navigation in the top left corner to navigate to additional reports).
Firehose Analysis reportsfrom 24 October 2012 (click on "Browse" in the "HTML" column). Here are some highlights:
Glioblastoma Multiforme Copy Number Analysis with GISTIC2: Demonstrates figures, tables and supplementary information.
Lung Squamous Cell Carcinoma Gene Mutation Analysis: Demonstrates figures in supplementary information.
Ovarian Serous Cystadenocarcinoma Putative microRNA Target Analysis: Demonstrates use of citations and input parameter lists in the Methods & Data section.
Uterine Corpus Endometrioid Carcinoma mRNA CNMF Clustering: Demonstrates (experimental) "Print" feature and "Report an Issue" button in the utility menu bar.
Code Examples
A very basic example from the GitHub repository.
The advanced demo requires download of code and additional files to generate the demo reports. Demonstrates all Nozzle features.
A Nozzle report mimicking a journal paper preprint. Uses a custom style sheet.

Hits:  UpdateTime:2013-08-22 14:34:36  【Printing】  【Close
Previous:No Information  Next:Another word for nozzle
sales sales MSNsales sales
sales sales MSNsales sales